Mcmc
UNPHASED v.3.1.5
UNPHASED is an software for performing genetic association analysis in nuclear families and unrelated subjects. It implements maximum-likelihood inference on haplotype and genotype effects while allowing for uncertain phase and missing genotypes.
McRate v.1.0
Calculate relative evolutionary rate with the help of this tool. McRate is a software for detecting conserved amino-acid sites by computing the relative evolutionary rate for each site in the multiple sequence alignment (MSA).